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3D Slicer as a platform for the automatic segmentation of real-time MRI data

Weber, Jonas Levin (2022) 3D Slicer as a platform for the automatic segmentation of real-time MRI data. Bachelor's, Technische Hochschule Köln.

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Abstract

Recent accomplishments in the field of medical imaging methods lead to the invention of real-time magnetic resonance imaging (MRI), a method that allows the recording of movies of, for example, the pumping heart. With real-time MRI, new insights into the physiology of the human heart can be gained but the method comes with a challenge: Different from conventional MRI, real-time MRI produces many more images that physicians and researchers possibly cannot evaluate manually. An ongoing research project at the German Aerospace Center evaluates machine learning methods to allow the automatic segmentation of cardiac real-time MRI images. A part of that project is the development of a software solution that researchers and medical staff can use to access the features of the automatic segmentation. This work aims at the evaluation of available software tools and frameworks in order to find a suitable tool for the development of the mentioned software solution. To accomplish this, different tools and frameworks are compared in terms of their feature sets, extendability, development workflows and licence restrictions. The Medical Imaging Interaction Toolkit and 3D Slicer will be compared in more depth leading to the selection of 3D Slicer. To prove that 3D Slicer is suitable as a software framework for the real-time MRI software solution, an example extension is developed that implements one of the software requirements. It will be concluded that 3D Slicer can be used to both efficiently implement the requirement of the example extension and be used as the base software framework to implement the other software requirements that are not developed as part of this work.

Item URL in elib:https://elib.dlr.de/187800/
Document Type:Thesis (Bachelor's)
Title:3D Slicer as a platform for the automatic segmentation of real-time MRI data
Authors:
AuthorsInstitution or Email of AuthorsAuthor's ORCID iD
Weber, Jonas LevinJonas.Weber (at) dlr.deUNSPECIFIED
Date:2022
Refereed publication:No
Open Access:Yes
Gold Open Access:No
In SCOPUS:No
In ISI Web of Science:No
Number of Pages:79
Status:Published
Keywords:MRI, real-time MRI, Segmentation, Software Design, Software Frameworks
Institution:Technische Hochschule Köln
Department:Fakultät für Informations-, Medien- und Elektrotechnik
HGF - Research field:Aeronautics, Space and Transport
HGF - Program:Space
HGF - Program Themes:Space System Technology
DLR - Research area:Raumfahrt
DLR - Program:R SY - Space System Technology
DLR - Research theme (Project):R - Tasks SISTEC
Location: Köln-Porz
Institutes and Institutions:Institut of Simulation and Software Technology > High Performance Computing
Institute for Software Technology
Deposited By: Rosauer, Philipp
Deposited On:11 Aug 2022 10:10
Last Modified:11 Aug 2022 10:10

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